An Integrated Prediction Pipeline for Bacterial Type III Secreted Effectors.  




Please input protein sequences in FASTA format:  

Protein sequences should be in FASTA format; for each protein, the name should neither be separated by space nor be with illegal characters such as "|".

OR Upload a FASTA file:



     Option1: promoter sequences

Sequences should be in FASTA format with a < 2001-nt length for each promoter; the name should exactly be consistent with that of protein sequence; the name should neither be separated by space nor be with illegal characters such as "|".

Please select the checkbox and then input promoter sequences in FASTA format.

     Option2: PSORTb   

PSORTb is available in "https://www.psort.org/psortb/index.html"; using the Tab-delimited (Terse Format) Output with 3 columns. Note that the protein name should exactly be consistent with that of protein sequence; the name should neither be separated by space nor be with illegal characters such as "|".

Please input the result document of PSORTb.

     Option3: TMHMM  

TMHMM is available in "https://services.healthtech.dtu.dk/service.php?TMHMM-2.0"; using the "One line per protein" output format. Note that the protein name should exactly be consistent with that of protein sequence; the name should neither be separated by space nor be with illegal characters such as "|".

Please input the result document of TMHMM.

     Option4: SignalP     

SignalP is available in "https://services.healthtech.dtu.dk/service.php?SignalP-4.1"; using the "short output format". Note that the protein name should exactly be consistent with that of protein sequence; the name should neither be separated by space nor be with illegal characters such as "|".

Please input the result document of SignalP.


     If you want to be notified after the program is completed, pleaseļ¼š