We Are Medical Bioinformatics Youth Pioneer.

Health Science Center, Shenzhen University, 2020.



MacKenzie KD, Wang Y, Musicha P, Hansen EG, Palmer MB, Herman DJ, Feasey NA, White AP. Parallel evolution leading to impaired biofilm formation in invasive Salmonella strains. PLoS Genet. 2019 Jun 24;15(6):e1008233. doi: 10.1371/journal.pgen.1008233. Pubmed

Yu J, Hu Y, Xu Y, Wang J, Kuang J, Zhang W, Shao J, Guo D, Wang Y. LUADpp: an effective prediction model on prognosis of lung adenocarcinomas based on somatic mutational features. BMC Cancer. 2019 Mar 22;19(1):263. doi: 10.1186/s12885-019-5433-7. Pubmed


Wang Y, Chen X, Hu Y, Zhu G, White AP, Köster W. The Evolution and Sequence Diversity of FhuA in Salmonella and Escherichia. Infect Immun. 2018 Aug 27; pii: IAI.00573-18. doi: 10.1128/IAI.00573-18. Pubmed

Zhong Q, Fang J, Huang Z, Yang Y, Lian M, Liu H, Zhang Y, Ye J, Hui X, Wang Y, Ying Y, Zhang Q, Cheng Y. A response prediction model for taxane, cisplatin, and 5-fluorouracil chemotherapy in hypopharyngeal carcinoma. Sci Rep. 2018 Aug 23; 8(1):12675. doi: 10.1038/s41598-018-31027-y. Pubmed

Ou BM, Garcia C, Wang Y, Zhang WP, Zhu GQ. Techniques for chromosomal integration and expression optimization in Escherichia coli. Biotechnol Bioeng. 2018 Jul 4; doi: 10.1002/bit.26790. Pubmed

Zhou L, Hui X, Yuan H, Liu Y, Wang Y. Combination of Genetic Markers and Age Effectively Facilitates the Identification of People with High Risk of Preeclampsia in the Han Chinese Population. BioMed Research International. 2018 Jun 11; Volume 2018, Article ID 4808046. Link

Wang Y, Sun MA (Eds). Transcriptome Data Analysis: Methods and Protocols. Methods in Molecular Biology Vol. 1751, Springer, Humana Press, 2018. ISSN: 1064-3745. DOI: 10.1007/978-1-4939-7710-9. Link


Shu XS, Zhao Y, Sun Y, Zhong L, Cheng Y, Zhang Y, Ning K, Tao Q, Wang Y, Ying Y. PBRM1 restricts the basal activity of innate immune system through repressing RIG-I-like receptor signaling and is a potential prognostic biomarker for colon cancer. Journal of Pathology. 2017 Sep 12; 244(1):36-48. Pubmed

Zhang S, Xu Y, Hui X, Yang F, Hu Y, Shao J, Liang H, Wang Y. Improvement in prediction of prostate cancer prognosis with somatic mutational signatures. Journal of Cancer. 2017 Aug 29. 8(16):3261-3267. Pubmed

Guo Z, Cheng X, Hui X, Shu X, White AP, Hu Y, Wang Y. Prediction of new bacterial type III secreted effectors with a recursive Hidden Markov Model profile-alignment strategy. Current Bioinformatics. 2017 Jul 24. Link

Zhang Q, Fan X, Wang Y, Sun M, Shao J, Guo D. BPP: a sequence-based algorithm for branch point prediction. Bioinformatics. 2017 Jun 19; 33(20):3166-3172. Pubmed

Hui X, Hu Y, Sun MA, Shu X, Han R, Ge Q, Wang Y. EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons. Bioinformatics. 2017 May 3; 33(17):2631-2641. Pubmed

Hu Y, Huang H, Cheng X, Shu X, White AP, Stavrinides J, Koster W, Zhu G, Zhao Z, Wang Y. A global survey of bacterial type III secretion systems and their effectors. Environ Microbiol. 2017 Apr 12; 19(10):3879-3895. Pubmed

Sun MA, Wang Y, Zhang Q, Xia Y, Ge W, Guo D. Prediction of reversible disulfide based on features from local structural signatures. BMC Genomics. 2017 Apr 4; 18(1):279. doi: 10.1186/s12864-017-3668-8. Pubmed

Wang J, Wang Y, Gao C, Jiang L, Guo D. PPero, a Computational Model for Plant PTS1 Type Peroxisomal Protein Prediction. PLoS ONE. 2017 Jan 3; 12(1):e0168912. doi: 10.1371/journal.pone.0168912. Pubmed


Han R, Huang G, Wang Y, Xu Y, Hu Y, Jiang W, Wang T, Xiao T, Zheng D. Increased gene expression noise in human cancers is correlated with low p53 and immune activities as well as late stage cancer. Oncotarget. 2016 Oct 4; doi: 10.18632/oncotarget.12457. Pubmed

Sun MA, Zhang Q, Wang Y, Ge W, Guo D. Prediction of redox-sensitive cysteines using sequential distance and other sequence-based features. BMC Bioinformatics. 2016 Aug 24;17(1):316. Pubmed

Shivak DJ, MacKenzie KD, Watson N, Pasternak A, Jones BD, Wang Y, DeVinney R, Wilson H, Surette MG, White AP. A modular, Tn7-based system for making bioluminescent or fluorescent Salmonella and E. coli strains. Appl Environ Microbiol. 2016 Jul 29;82(16):4931-43. Pubmed

Zhou L, Cheng L, He Y, Gu Y, Wang Y, Wang C. Association of gene polymorphisms of FV, FII, MTHFR, SERPINE1, CTLA4, IL10, and TNFalpha with pre-eclampsia in Chinese women. Inflamm Res. 2016 Sep;65(9):717-24. Pubmed

Hu Y, Huang H, Hui X, Cheng X, White AP, Zhao Z*, Wang Y*. Distribution and Evolution of Yersinia Leucine-Rich Repeat Proteins. Infect Immun. 2016 Jul 21;84(8):2243-54. Pubmed